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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs202231589 chr2:17922115 TCAAAAAAACAAAAAA/T 1.43E-8 404 15.25 15.97 7.33 KM Plot
LGG rs2029695 chr13:44305454 C/T 2.82E-13 407 15.67 11.43 4.62 KM Plot
LGG rs203997 chr5:156028302 C/T 0.000116 407 16.73 14.37 10.7 KM Plot
LGG rs2044910 chr5:94000306 A/G 4.32E-5 407 14.78 17.63 9.8 KM Plot
LGG rs2047319 chr5:93949670 C/A 4.46E-5 404 14.78 17.73 9.8 KM Plot
LGG rs2050944 chr10:918910 T/C 2.87E-6 404 15.02 17.38 10.57 KM Plot
LGG rs2059237 chr16:67436858 A/G 6.24E-5 406 15.25 16.42 16.55 KM Plot
LGG rs2074813 chr2:70901576 A/G 0.000114 407 11.17 16.15 15.5 KM Plot
LGG rs2078723 chr1:159072081 C/G 7.64E-6 400 17.83 13.7 15.37 KM Plot
LGG rs207908 chr2:217015947 A/T 0.00011 396 10.88 15.93 19.2 KM Plot
LGG rs2082388 chr5:155953919 A/G 5.13E-6 403 15.6 15.23 15.37 KM Plot
LGG rs2083227 chr5:92815294 G/A 1.67E-5 407 15.17 16.17 18.57 KM Plot
LGG rs2094354 chr13:52782584 A/G 3.24E-5 407 4.27 14.62 15.67 KM Plot
LGG rs2098355 chr2:202042916 T/C 1.82E-6 405 15.32 15.57 4.45 KM Plot
LGG rs2101051 chr10:1158791 G/T 1.55E-11 404 16.1 14.93 8 KM Plot